Nonselected Candidate Genes Engineered by the BioEnergy Science Center: 2007-2012
Nelson, R.S., Stewart Jr., C.N., Gou, J., Holladay, S., Gallego-Giraldo, L., Flanagan, A., Mann, D.G.J., Hisano, H., Wuddineh, W.A., Poovaiah, C.R., Srivastava, A., Biswal, A.K., Shen, H., Escamilla-Trevino, L.L., Yang, J., Hardin, C.F., Nandakumar, R., Fu, C., Zhang, J., Xiao, X., Percifield, R., Chen, F., Bennetzen, J.L., Udvardi, M., Mazarei, M., Dixon, R.A., Wang, Z.Y., Tang, Y., Mohnen, D., Davison, B.H., "Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance", Biotechnology for Biofuels, 10:309, 2017. DOI: 10.1186/s13068-017-0991-x
Genome-Wide Association Study (GWAS) Dataset Released
Includes genotype origin and SNP calls per genotype for ca. 1000 Populus trichocarpa genotypes.
This resource provides access to several types of BESC related datasets. These include the current list of BESC publications with direct links to data submissions (by Accession numbers) in public repositories (e.g. NCBI, PDB, ATCC). Also included is an interactive mode of exploration of multi-level BESC omics data (genome, transcriptome, proteome), using the JBrowse genome browser.
Links to BESC data submissions in public repositories (e.g. NCBI, PDB, ATCC), in support of BESC publications.
|Clostridium thermocellum DSM 1313||Analysis of genetic variation from different lineage samples from metabolic engineering of Clostridium thermocellum DSM 1313|
|Clostridium thermocellum ATCC 27405||Identified promoter regions by 5' Race RNA-Sequencing of Clostridium thermocellum ATCC 27405 for transcription unit architecture|
|Populus trichocarpa 210_v3 Omics||Integration of genetic variation at DNA and RNA level, gene expression and proteomics analysis of different genotypes of Poplar trichocarpia|
See also BESC related tools